We also evaluated histopathologically confirmed CIN2+, irrespective of HPV type, in an analysis that considered outcomes that occurred in the absence of HPV during the vaccination period. For safety analyses, solicited local and general

adverse events (AEs) within 60 min after vaccination (all subjects) or from day 3–6 post-vaccination (10% random subset) were evaluated. Unsolicited AEs, serious adverse events (SAEs), and pregnancies/pregnancy outcomes were documented throughout the 4-year study period. Impact of vaccination on pregnancies/pregnancy losses was reported on separately [18] and is not considered here because limited new blinded information on pregnancies around vaccination was accrued after the initial PFI-2 chemical structure report. For immunogenicity analyses, we evaluated presence and level of HPV-16 and HPV-18 antibodies by ELISA and by HPV-16 V5 and HPV-18 J4 monoclonal antibody inhibition

EIA measured during the vaccination period, at one month after the last vaccination, and at annual visits thereafter in the subjects enrolled into the immunogenicity cohort. Vaccine efficacy (VE), defined as the percentage reduction in an endpoint due to the vaccine, was estimated as the complement of the ratio of the attack rates (risk ratio) in the HPV and control arms. The attack rate was calculated as the percentage of women who experienced the endpoint. The complement of the 95% confidence interval (95% CI) for the Venetoclax concentration risk ratio was used to calculate the CI for the VE estimates. The difference between the attack rates in the Endonuclease two arms was used to assess rate reductions. The CI for the difference was calculated using the conditional exact test. Separate analyses were conducted for HPV-16/18, all oncogenic HPV types combined, all oncogenic HPV types combined excluding HPV-16/18, individual HPV types, and irrespective of HPV type. The proportion of subjects with at least one SAE classified by International Classification of Diseases Version 10 during the study is presented by study group. Similar information is presented for grade 3 (severe) SAEs and for SAEs classified by the local

investigator as possibly related to vaccination. We report separately the proportion of subjects with at least one reported autoimmune AE, neurological AE or death. Seropositivity rates and Geometric Mean Titers (GMTs) with 95% CIs were calculated. When calculating GMTs, antibody titers below the assay cut-off were given a value of half the cut-off. Participants in the HPV and control arms of the trial and included in the ATP cohort for efficacy were comparable with respect to age, clinic, sexual behavior and HPV-16/18 serology and DNA results at entry (Supplemental Table 1). Supplementary Table 1.   Balance by arm on selected enrollment characteristics – ATP cohort for efficacy – Costa Rica HPV-16/18 vaccine trial (CVT).